Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs72862041 | chr18:5252058 | C/T | 7.52E-8 | 213 | 9.05 | 12.3 | 4.85 | KM Plot |
| BLCA | rs72862078 | chr18:5268415 | T/C | 8.78E-10 | 214 | 9.05 | 12.82 | 4.85 | KM Plot |
| BLCA | rs72863631 | chr18:5294235 | A/C | 8.71E-9 | 206 | 9.27 | 13.03 | 4.73 | KM Plot |
| BLCA | rs73289960 | chr17:18199454 | A/G | 2.57E-8 | 211 | 9.8 | 7.9 | 2.07 | KM Plot |
| BLCA | rs74244686 | chr15:40786656 | C/T | 0.000147 | 211 | 10.72 | 6.8 | 5.43 | KM Plot |
| BLCA | rs7432982 | chr3:117577783 | T/C | 0.000131 | 215 | 6.57 | 2.48 | 10.13 | KM Plot |
| BLCA | rs74363042 | chr15:40898788 | G/A | 8.24E-5 | 213 | 10.6 | 6.47 | 4.55 | KM Plot |
| BLCA | rs744000 | chr1:7934518 | G/A | 1.44E-10 | 215 | 10.67 | 2.13 | 2.27 | KM Plot |
| BLCA | rs74793272 | chr15:40904530 | C/A | 4.13E-6 | 214 | 10.72 | 6.67 | 6.13 | KM Plot |
| BLCA | rs74818172 | chr7:100512536 | T/C | 1.9E-5 | 206 | 10.53 | 9.47 | 3.98 | KM Plot |
| BLCA | rs75015446 | chr15:40929202 | T/A | 4.13E-6 | 214 | 10.72 | 6.67 | 6.13 | KM Plot |
| BLCA | rs75387822 | chr15:41050171 | G/A | 5.01E-6 | 210 | 10.7 | 7.43 | 6.13 | KM Plot |
| BLCA | rs7573808 | chr2:140068935 | G/T | 0 | 216 | 9.43 | 9.9 | 2.07 | KM Plot |
| BLCA | rs75814867 | chr15:40803582 | G/T | 1.24E-5 | 214 | 10.73 | 6.77 | 6.13 | KM Plot |
| BLCA | rs75826635 | chr15:40936022 | A/G | 4.13E-6 | 214 | 10.72 | 6.67 | 6.13 | KM Plot |